Downloading FCP-INDI Neuroimaging Data from Amazon S3

Introduction

Data for the 1000 Functional Connectomes Project / INDI are now available for download from an Amazon Web Services S3 bucket.

There are file transfer programs that can handle S3 natively and will allow you to navigate through the data using a file browser. Cyberduck is one such program that works with Windows and Mac OS X. Cyberduck also has a command line version that works with Windows, Mac OS X, and Linux. Instructions for using Cyberduck are as follows:

  1. Open Cyberduck and click on Open Connection.
  2. Set the application protocol in the dropdown menu to S3 (Amazon Simple Storage Service).
  3. Set the server to s3.amazonaws.com.
  4. Check the box labelled Anonymous Login.
  5. Expand the More Options tab and set Path to fcp-indi/data/Projects.
  6. Click Connect.

The end result should appear as follows:

_images/cyberduck.png

Accessing Individual Datasets

Once you have navigated to fcp-indi/data/Projects, you will be presented with individual directories for all of the datasets we have available:

Dataset Name Location in S3 Bucket Raw Data Available? Preprocessed Data Available?
Autism Brain Imaging Data Exchange (ABIDE) I fcp-indi/data/Projects/ABIDE Yes Yes
Autism Brain Imaging Data Exchange (ABIDE) II fcp-indi/data/Projects/ABIDE2 Yes Coming Soon!
Addiction Connectome Preprocessed Initiative (ACPI) fcp-indi/data/Projects/ACPI Yes Yes
ADHD-200 fcp-indi/data/Projects/ADHD200 Yes Yes
Brain Genomics Superstruct Project (BGSP) fcp-indi/data/Projects/BGSP Yes Coming Soon!
Consortium for Reliability and Reproducibility (CoRR) fcp-indi/data/Projects/CORR Yes Yes
Multimodal Resource for Studying Information Processing in the Developing Brain (MIPDB) fcp-indi/data/Projects/EEG_Eyetracking_CMI_data Yes Yes
Healthy Brain Network fcp-indi/data/Projects/HBN (uncompressed)
fcp-indi/data/Archives/HBN (compressed)
Yes Yes
Healthy Brain Network Serial Scanning Initiative (HBN-SSI) fcp-indi/data/Projects/HBNSSI Yes Coming Soon!
Enhanced Nathan Kline Institute Rockland Sample fcp-indi/data/Projects/RocklandSample Yes Yes
Resting state of the static hypnotic state. fcp-indi/data/Projects/INDI/HypnosisBarrios Yes Coming Soon!
Southwest University Longitudinal Imaging Multimodal (SLIM) Brain Data Repository fcp-indi/data/Projects/INDI/SLIM Yes Coming Soon!
Southwest University Adult Lifespan Dataset (SALD) fcp-indi/data/Projects/INDI/SALD Yes Coming Soon!
Anatomical Tracings of Lesions After Stroke (ATLAS) R1.1 fcp-indi/data/Projects/INDI/ATLAS Yes Coming Soon!
Max Planck Institut Leipzig Mind-Brain-Body Dataset openneuro/ds000221/ds000221_R1.0.0/compressed Yes Coming Soon!
Parkinson's Disease Datasets fcp-indi/data/Projects/INDI/umf_pd Yes Coming Soon!

Generally, subdirectories within these datasets conform to the following scheme:

  • RawDataBIDS : Raw data organized in the BIDS format.
  • RawDataTars : Aggregated individualized datasets in the BIDS format shared as tarred and gzipped files of approximately 2-4 GB each.
  • Outputs : Derivatives of raw data (such as outputs from Freesurfer, field map-corrected data, C-PAC outputs, and preprocessed data).

Table Of Contents

This Page